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NRDR - The Non-coding RNA Databases Resource


Database version: 2015
RNA Type: miRNA
Overview: Transposable elements (TEs) as important components of many genomes are able to mobilized and replicate in the host genomes. They are considered as an important source of miRNAs in animals and plants. MDTE database is a resource for store and analysis of miRNAs which are derived from TEs (MDTEs). In the database, MDTEs are collected from computational methods and literatures. A tool is provided for identifying MDTEs from the results of RepeatMasker. These resources help researchers to further analyze the evolution of miRNAs and understand the regulation mechanism of miRNAs.
Search Methods:
  • Keyword: Search by species name and/or microRNA name, combining several other features
  • Tabular: Browse through the species available in the database
Source: miRBase, ENSEMBL, RepeatMasker, literature
Information Source: In silico annotation, Literature.
Information Content: .
Reference: Wei et al. 2015. IEEE/ACM Trans Comput Biol Bioinform. DOI: 10.1109/TCBB.2015.2511767
PubmedID: 26841410.
Year: 2015
Multiple search: Yes
Download: Other.
Genomic Overview: No
Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Gallus gallus (Chicken), Bos Taurus (Cattle), Monodelphis domestica, Pan troglodytes (Chimpanzee), Oryza sativa (Rice), Bombyx mori, Macca mulatta, Arabadopsis thaliana.

Url: http://bioinf.njnu.edu.cn/MDTE/MDTE.php
June 2018: Release 3.0