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NRDR - The Non-coding RNA Databases Resource


Database version: 2.0
RNA Type: miRNA
Overview: SomamiR is a database of cancer somatic mutations in microRNAs (miRNA) and their target sites that potentially alter the interactions between miRNAs and competing endogenous RNAs (ceRNA) including mRNAs, circular RNAs (circRNA) and long noncoding RNAs (lncRNA). It also provides an integrated platform for the functional analysis of these somatic mutations.
Search Methods:
  • Genomic Location: Genomic coordinates through a specific form
  • Keyword: Search using microRNA ID, transcript ID or gene symbol
  • TAG: TAG selection according to cancer types
Source: miRBase; starBase; UCSC Genome Browser; COSMIC; LNCipedia; circBase
Information Source: In silico annotation.
Information Content: .
Reference: Bhattacharya A, Cui Y. SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions. Nucleic Acids Res. 2016; 44(D1): D1005-D1010.
PubmedID: 26578591.
Year: 2016
Multiple search: No
Download: Other.
Genomic Overview: No
Organism: Homo sapiens (Human).

Url: http://compbio.uthsc.edu/SomamiR/
June 2018: Release 3.0