SomamiR

Database version: 2.0

RNA Type: miRNA

Overview: SomamiR is a database of cancer somatic mutations in microRNAs (miRNA) and their target sites that potentially alter the interactions between miRNAs and competing endogenous RNAs (ceRNA) including mRNAs, circular RNAs (circRNA) and long noncoding RNAs (lncRNA). It also provides an integrated platform for the functional analysis of these somatic mutations.

Search Methods:

• Genomic Location: Genomic coordinates through a specific form
• Keyword: Search using microRNA ID, transcript ID or gene symbol
• TAG: TAG selection according to cancer types

Source: miRBase; starBase; UCSC Genome Browser; COSMIC; LNCipedia; circBase

Information Source: In silico annotation.

Information Content: .

Reference: Bhattacharya A, Cui Y. SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions. Nucleic Acids Res. 2016; 44(D1): D1005-D1010.

PubmedID: 26578591.

Year: 2016

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Homo sapiens (Human).

Url: http://compbio.uthsc.edu/SomamiR/