AtmiRNET

Database version: 2015

RNA Type: miRNA

Overview: AtmiRNET is a novel resource geared towards plant scientists for reconstructing regulatory networks of Arabidopsis miRNAs. By means of highlighted miRNA studies in target recognition, functional enrichment of target genes, promoter identification, and detection of cis- and trans- elements, AtmiRNET allows users to explore mechanisms of transcriptional regulation and miRNA functions in Arabidopsis thaliana, which are rarely investigated so far.

Search Methods:

• Keyword: Search by microRNA name, transcription factor name, target gene name

Source: RIKEN, ChIP-seq, PlantPromDB, literature, TAIR, microarray, Cytoscape

Information Source: In silico annotation.

Information Content: .

Reference: Chien et al. 2015. AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. Database 2015, bav042.

PubmedID: 25972521.

Year: 2015

Multiple search: Yes

Download: No

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress).

Url: http://atmirnet.itps.ncku.edu.tw