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NRDR - The Non-coding RNA Databases Resource


Database version: 2016
RNA Type: miRNA
Overview: MicroTrout is a comprehensive resource for rainbow trout miRNA and annotated 3’UTRs. The comprehensive database was used to implement an algorithm to predict genome-wide rainbow trout-specific miRNA-mRNA target relationships, generating an improved predictive framework over previously published approaches for this species.
Search Methods:
  • TAG: TAG selection according microRNA name
Source: RNA-seq, literature, Gene Ontology (GO), BLAST2GO, InterPro, miRanda
Information Source: In silico annotation, Literature.
Information Content: .
Reference: Mennigen and Zhang, 2016 Comp Biochem Physiol Part D Genomics Proteomics - Part D: Genomics and Proteomics, 20:19-26
PubmedID: 27494513.
Year: 2016
Multiple search: No
Download: No
Genomic Overview: No
Organism: Oncorhynchus mykiss.

Url: http://www.mennigen-lab.com/microtrout.html
June 2018: Release 3.0