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NRDR - The Non-coding RNA Databases Resource

piRNA cluster database

Database version: 2016
RNA Type: piRNA
Overview: piRNA cluster database is the first database that focuses on genomic piRNA clusters as a biological source of piRNAs rather than piRNA sequences itself. Moreover, the algorithm that was used for piRNA cluster prediction was recently used to annotate piRNA clusters in many different species
Search Methods:
  • Tabular: Browse piRNAs according to each one of the 12 species
Source: SRA, sRNAmapper, reallocate, miRBase, proTRAC, RepeatMasker
Information Source: In silico annotation.
Information Content: .
Reference: Rosenkranz D. 2016. piRNA cluster database: a web resource for piRNA producing loci. Nucleic Acids Research. 44(D1):D223-D230.
PubmedID: 26582915.
Year: 2016
Multiple search: No
Download: BED.
Genomic Overview: No
Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Sus scrofa (Wild Boar), Macaca fascicularis, Tupaia belangeri, Callithrix jacchus (Marmoset ).

Url: http://www.smallrnagroup.uni-mainz.de/piRNAclusterDB.html
June 2018: Release 3.0