GreeNC

Database version: 1.12

RNA Type: Long RNA

Overview: The Green Non-Coding Database (GreeNC) is a repository of lncRNAs annotated in plants and algae. By using the same pipeline to annotate lncRNAs and organizing them in a central database, GreeNC aim to provide a tool for the scientific community that can boost the research on this class of transcripts. The GreeNC database provides information about sequence, genomic coordinates, coding potential and folding energy for all the identified lncRNAs.

Search Methods:

• Genomic Location: Search by genomic coordinates
• Similarity: BLAST searches against stored lncRNAs
• TAG: Search by species, filtering by a combination of multiple features

Source: Phytozome, Infernal, Rfam, miRBase, MIReNA, RepeatMasker, RepBase

Information Source: In silico annotation.

Information Content: .

Reference: Gallart et al. 2015. GREENC: a Wiki-based database of plant lncRNAs. Nucleic Acids Research. 44: D1161–D1166

PubmedID: 26578586.

Year: 2015

Multiple search: Yes

Download: FASTA.

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress), Glycine Max (Soybean), Medicago truncatula (Barrel Medic), Oryza sativa (Rice), Vitis vinifera, Chlamydomonas reinhardtii (Green Alga), Physcomitrella patens, Selaginella moellendorffii, Arabidopsis lyrata, Carica papaya (Papaya), Ricinus communis (Castor bean), Phaseolus vulgaris, Gossypium raimondii, Theobroma cacao (Cacao), Malus domestica and 30 others.

Url: http://greenc.sciencedesigners.com