CoGemiR

RNA Type: miRNA

Overview: Comparative Genomic MicroRNA (CoGemiR) is a database of metazoan evolutionary conserved microRNAs. It provides information related to the miRNA host gene (e.g., exonic, intronic, etc), genomic location and expression of both experimentally confirmedand newly predicted miRNAs.

Search Methods:

• Keyword: search by one or more miRNA names (e.g., hsa-miR-373 or let-7).
• TAG: search by a multiple option tag of miRNA/Family and Species/Clade where the user can mix the selection based on a series of annotations (e.g., conservation, number of intron/exon where the miRNA is inserted, genomic coordinates, etc).

Source: miRBase, Ensembl, SymAtlas and in-house pipeline.

Information Source: In silico annotation.

Information Content: Alignment, Annotation, Conservation, Expression, Localization, Sense/Antisense, Sequence.

Reference: Maselli et al., 2008

PubmedID: 18837977.

Year: 2008

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: No

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Ciona intestinalis, Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Monodelphis domestica, Pan troglodytes (Chimpanzee), Cavia porcellus (Guinea Pig) and 23 others.

Url: http://cogemir.tigem.it/