PeTMbase

Database version: 2016

RNA Type: Long RNA

Overview: PeTMbase aims to provide a resource for endogenous miRNA target (eMTs) mimics RNAs for plants. eMTs are a new type of long non-coding RNAs (lncRNAs), which bind to the corresponding miRNAs to block the binding of specific transcript leading to increase mRNA expression.

Search Methods:

• Keyword: Keyword search by microRNA name
• TAG: TAG selection of the species name

Source: Sequences predicted computationally

Information Source: In silico annotation.

Information Content: .

Reference: Karakülah G, Yücebilgili Kurtoğlu K, Unver T (2016) PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PLoS ONE 11(12): e0167698.

PubmedID: 27936097.

Year: 2016

Multiple search: No

Download: Other.

Genomic Overview: No

Organism: Glycine Max (Soybean), Medicago truncatula (Barrel Medic), Oryza sativa (Rice), Populus trichocarpa, Solanum lycopersicum (Tomato ), Brachypodium distachyon, Hordeum vulgare, Sorghum bicolor (Sorghum), Triticum aestivum (Bread wheat), Aabidopsis thaliana.

Url: http://petmbase.org