snOPY

Database version: 2013

RNA Type: snoRNA

Overview: snOPY (small nucleolar RNA orthological gene database) provides comprehensive information about three types of infromation: snoRNAs, snoRNA gene loci, and target RNAs. snOPY also provides information about snoRNA orthologues, which enables users to analyze the evolution of snoRNA genes.

Search Methods:

• Keyword: Keywords
• Similarity: search against sequence in snoRNA or Locus or rRNA databases
• Tabular: Organisms, snoRNA
• TAG: Species, Box type, Target RNA, Organization, Curation status

Source: Public databases, BLAST, ClustalW

Information Source: In silico annotation, Literature, Manual curation.

Information Content: Alignment, Orthologs, Similarity, Target RNA.

Reference: Yoshihama et al., 2013

PubmedID: 24148649.

Year: 2013

Multiple search: Yes

Download: FASTA.

Genomic Overview: Yes

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Monodelphis domestica, Pan troglodytes (Chimpanzee), Cavia porcellus (Guinea Pig), Equus caballus (Horse), Gasterosteus aculeatus and 18 others.

Url: http://snoopy.med.miyazaki-u.ac.jp