- Search Result
- Database Details
Database version: 2009
RNA Type: Multiple classes
Overview: The Genomic tRNA Database (GtRNAdb) is currently including over 74 000 tRNA genes predicted from 740 species. This database contains tRNA mostly built based on the tRNAscan-SE software prediction in Eukaryota, Archaea and Bacteria domains.
- TAG: Domain, Amino Acid (anticodon), Phylogeny
- Keyword: Clade, Chromosome/Scaffold, Genome, score and some options (filter).
- Similarity: by blastn with some options to choose.
Source: tRNAscan-SE 2.0, GtRNAdb previous version.Homo sapiens (GRCh37/hg19), Mus musculus (GRCm38/mm10), Saccharomyces cerevisiae S288c, Escherichia coli str. K-12 substr. MG1655, Caenorhabditis elegans (WS220/ce10), Drosophila melanogaster (BDGP Rel. 6/dm6)
Information Source: In silico annotation.
Information Content: Alignment, Prediction tools, Secondary Structure, Sequence.
Reference: Chan and Lowe, 2009
Multiple search: Yes
Download: FASTA, Other.
Genomic Overview: Yes