GtRNAdb

Database version: 2009

RNA Type: Multiple classes

Overview: The Genomic tRNA Database (GtRNAdb) is currently including over 74 000 tRNA genes predicted from 740 species. This database contains tRNA mostly built based on the tRNAscan-SE software prediction in Eukaryota, Archaea and Bacteria domains.

Search Methods:

• TAG: Domain, Amino Acid (anticodon), Phylogeny
• Keyword: Clade, Chromosome/Scaffold, Genome, score and some options (filter).
• Similarity: by blastn with some options to choose.

Source: tRNAscan-SE 2.0, GtRNAdb previous version.Homo sapiens (GRCh37/hg19), Mus musculus (GRCm38/mm10), Saccharomyces cerevisiae S288c, Escherichia coli str. K-12 substr. MG1655, Caenorhabditis elegans (WS220/ce10), Drosophila melanogaster (BDGP Rel. 6/dm6)

Information Source: In silico annotation.

Information Content: Alignment, Prediction tools, Secondary Structure, Sequence.

Reference: Chan and Lowe, 2009

PubmedID: 18984615.

Year: 2009

Multiple search: Yes

Download: FASTA, Other.

Genomic Overview: Yes

Organism: Homo sapiens (Human), Rattus norvegicus (Norway Rat), Canis familiaris (Dog), Mus musculus (House Mouse), Danio rerio (Zebrafish), Takifugu rubripes (Fugu), Gallus gallus (Chicken), Drosophila melanogaster (Common Fruit Fly), Caenorhabditis elegans, Arabidopsis Thaliana (Thale Cress), Macaca mulatta (Rhesus Monkey), Bos Taurus (Cattle), Ovis aries (Sheep), Sus scrofa (Wild Boar), Monodelphis domestica and 4254 others.

Url: http://gtrnadb.ucsc.edu/