RNA Type: small RNA
Overview: The AthaMap database generates a genome-wide map for putative transcription factor binding sites for A. thaliana. When analyzing transcriptional regulation using AthaMap it may be important to learn which genes are also post-transcriptionally regulated by inhibitory RNAs. Therefore, a unified database for transcriptional and post-transcriptional regulation will be highly useful for the analysis of gene expression regulation
Search Methods:
  • Keyword: Search by Chromosome position, AGI and % Restriction to highly conserved TF binding sites (0-100).
  • TAG: search by Chromosome
Source: Annotation, Literature
Information Source: In silico annotation, Literature.
Information Content: Annotation, literature references.
Reference: Bülow L., Bolívar J., et al (2012) ‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. BioData Mining 2012, 5:7.
PubmedID: 22800758.
Year: 2012
Multiple search: Yes
Download: No
Genomic Overview: Yes
Organism: Arabidopsis Thaliana (Thale Cress).

June 2018: Release 3.0