AthaMap

RNA Type: small RNA

Overview: The AthaMap database generates a genome-wide map for putative transcription factor binding sites for A. thaliana. When analyzing transcriptional regulation using AthaMap it may be important to learn which genes are also post-transcriptionally regulated by inhibitory RNAs. Therefore, a unified database for transcriptional and post-transcriptional regulation will be highly useful for the analysis of gene expression regulation

Search Methods:

• Keyword: Search by Chromosome position, AGI and % Restriction to highly conserved TF binding sites (0-100).
• TAG: search by Chromosome

Source: Annotation, Literature

Information Source: In silico annotation, Literature.

Information Content: Annotation, literature references.

Reference: Bülow L., Bolívar J., et al (2012) ‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. BioData Mining 2012, 5:7.

PubmedID: 22800758.

Year: 2012

Multiple search: Yes

Download: No

Genomic Overview: Yes

Organism: Arabidopsis Thaliana (Thale Cress).

Url: http://www.athamap.de/