Mobile Group II Introns

RNA Type: Ribozyme

Overview: The Mobile Group II Introns is a database with information related to group II introns from several bacterial and lower eukaryotic organellar genomes. The main data available is related to secondary structure predictions, open reading frames and phylogenetic information.

Search Methods:

• Tabular: search by ORF Name, host gene, locus, ORF domains, size (aa), ORF class, intron structure type (in Bacterial Group II introns by Organism search); by host gene, locus, size, intron structure type (in ORF-less bacterial introns search); by intron RNA domains, intron ORF domains, size, closest relative, locus, notes (in Fragments of introns search); by organism class, host gene, intron, ORF domains, size (aa), ORF fused with upstream exon (in Mitochondrial or Chloroplast Group II introns by Organism search); or by species, accessionnumber.

Source: GenBank and in-house analysis.

Information Source: In silico annotation.

Information Content: Alignment, Chloroplast, Evolution, Host Gene, Introns fragments, Locus, Mitochondrial, Models (3D Model), ORF, Phylogeny, Sequence, Structure.

Reference: Kowarsch et al., 2011

PubmedID: 12520040.

Year: 2003

Multiple search: No

Download: No

Genomic Overview: No

Organism: Arabidopsis Thaliana (Thale Cress), Glycine Max (Soybean), Neurospora crassa, Saccharomyces cerevisiae, Zea mays, Kluyveromyces lactis, Candida parapsilosis, Podospora anserina, Marchantia polymorpha, Amoebidium parasiticum, Allomyces macrogynus, Chara vulgaris, Porphyra purpurea, Pylaiella littoralis, Mesostigma viride and 13 others.

Url: http://www.fp.ucalgary.ca/group2introns/