NAPP

RNA Type: Multiple classes

Overview: Nucleic acid phylogenetic profiling (NAPP) is a database of classified coding and non-coding sequences based on genomic conservation. It was built based on a clustering method that efficiently identifies noncoding RNA (ncRNA) elements, particular small RNAs and cis regulatory RNAs in bacterial and archeal genomes.

Search Methods:

• Keyword: search by genome name or name part (e.g. bacillus).
• TAG: search by species name.

Source: GenBank, NAPP Pipeline, NCBI BLAST, Rfam 10.0, Gene Ontology

Information Source: In silico annotation, In silico annotation.

Information Content: Conservation, Gene Ontology, Ontology, Phylogeny, Pipeline.

Reference: Ott et al., 2011

PubmedID: 21984475.

Year: 2011

Multiple search: Yes

Download: GFF, Other.

Genomic Overview: No

Organism: Drosophila melanogaster (Common Fruit Fly), Culex quinquefasciatus, Brugia malayi, Escherichia coli, Photorhabdus luminescens, Bacillus subtilis, Listeria monocytogenes, Prochlorococcus marinus, Pseudomonas aeruginosa, Pseudomonas fluorescens, Vibrio harveyi, Sulfolobus solfataricus, Sulfolobus acidocaldarius, Methanococcus jannaschii, Pyrococcus horikoshii and 700 others.

Url: http://napp.u-psud.fr/